genomics

Plotting SRA database growth

The Sequence Read Archive is NCBI’s database for high throughput sequencing data and the largest public repository for such data. The data on the growth of the database is available here

Arabidopsis BORDER proteins put the breaks on RNA polymerase II elongation

While studying the regulation of flowering in Arabidopsis thaliana, we uncovered a family of proteins that play multifaceted roles in gene expression via a common mechanism: slowing down the progression of RNA polymeraseII

Bioinformatics and Biostatistics

Tools for the analysis and integration of high throughput data

Chromatin and Transcription

Transcription by RNA polymerase II in the context of chromatin

Endoreduplication in tomato fruit

Gene expression regulation during endoreduplication in the pericarp of tomato fruit

Food toxicology

Understanding the mechanisms and impacts of food contaminants on biological systems

Nuclear receptors

Regulation of gene expression in the liver by nuclear receptors

GeneNeighborhood: an R package to explore the direct neighbors of your favorite gene set

Visit [GeneNeighborhood on github](https://github.com/pgpmartin/GeneNeighborhood)

A family of negative transcription elongation factors protects the genome of Arabidopsis thaliana from transcriptional interferences

BDR negative elongation factors protect the genome from transcriptional interferences

A family of negative transcription elongation factors regulates defense response genes and protects the genome of A. thaliana from transcriptional interferences

BDR negative elongation factors protect the genome from transcriptional interferences